Journal: Biological Procedures Online

Article Title: Standardized Pre-clinical Surgical Animal Model Protocol to Investigate the Cellular and Molecular Mechanisms of Ischemic Flap Healing

doi: 10.1186/s12575-023-00227-w

Figure Lengend Snippet: Flap tissue harvest. A Flap appearance and different surgical outcomes (full survival, partial or complete failure) at chosen end-point. B Flap division into thirds and longitudinal sections. C Removal of sutures and flap excision. D Inspection of pedicle function. D Physical flap division into the proximal (P), middle (M) and distal (D) portions. E Isolation of longitudinal section out of D portion of excised flap for the subsequent fixation and histological (HIS) or immunohistochemical (IHC) analysis

Article Snippet: We also provide several simulated statistical flap survival data analysis examples in GraphPad Prism 9.5.0 software (Additional File and Additional File , Fig. S12).

Techniques: Isolation, Immunohistochemical staining

Journal: Biological Procedures Online

Article Title: Standardized Pre-clinical Surgical Animal Model Protocol to Investigate the Cellular and Molecular Mechanisms of Ischemic Flap Healing

doi: 10.1186/s12575-023-00227-w

Figure Lengend Snippet: Application of conventional unilateral versus BEFAF model to explore the effects of prophylactic/therapeutic surgical flap treatment on tissue susceptibility to secondary ischemia. Experimental design: the SIEV and SIEA of the pedicle are clamped with a single atraumatic non-serrated S&T 11 mm vascular clamp for 2 h to induce primary ischemia (PI). After 2 h the clamp is released, and the flap is allowed to reperfuse for 6 h (R1) prior to repeated SIEV and SIEA clamping to induce a secondary ischemia (SI) by arteriovenous occlusion (AVO) lasting for 4 h. Once the SI is alleviated, the secondary reperfusion (R2) begins until the endpoint (POD 8). Experimental and control treatments are introduced prior to R1 and R2 events by intradermal injection into the distal flap region. A In a traditionally used ischemic flap model, a single fasciocutaneous flap is created and rotated around a pivotal axis point (the base of the pedicle may remain intact or may be severed to minimize a residual microvascular inflow) per animal. Power analysis suggests that if the flap survival percentage response within each subject after SI is normally distributed with standard deviation of 10, and assuming the attrition rate is 10%, then if the true difference in the experimental and control means is 20 as to be calculated by independent two-tailed Student’s T-test, we would need to study 7 experimental and 7 control subjects (total N = 14 animals) to be able to reject the null hypothesis that the population means of two groups are equal with probability (power) of 0.9. The Type I error probability associated with this test of this null hypothesis is 0.05. B Left panel. To perform the similarly powered experiment with twice as few animals per group, two 3 × 9 cm BEFAF flaps were created within each animal: one flap was assigned to the treatment, and the opposite flap – to the control group. Experimental treatment solutions were prepared from blood collected through cardiac puncture of previously sacrificed inbred Lewis strain rats ( N = 12). Mixed arteriovenous blood was collected in 4.5 mL BD Vacutainer® Sodium Citrate (0.105 M, 3.2%) glass tubes that were centrifuged at 400 × g for 10 min at 4°C to separate plasma from red blood cells. Plasma with a buffy coat layer was collected into sterile 5 mL Eppendorf tube and spun at 1,000 × g for 10 min to sediment platelets and leukocytes. Half of supernatant was collected into 2 mL Eppendorf tube ( platelet poor plasma, PPP ). The remaining supernatant was gently mixed with the pellet and transferred into a separate 2 mL Eppendorf tube ( platelet rich plasma, PRP ). PPP and PRP solutions were activated by adding 1 M CaCl 2 to the final concentration of 22.2 mM and incubating the tubes in a dry bath at 37°C for 1 h. Growth factors (GFs) were released from the precipitated platelets into the liquid fraction after final centrifugation step at 10,000 × g for 10 min. Supernatants were passed through sterile 0.22 µm pore size syringe filter, combined into a single aPPP or aPRP stock solution and stored at -20°C until further use. Pooling was intended to eliminate or minimize the heterogeneity of aPRP or aPPP content so that all flaps would receive an equal concentration of GF-enriched or control filtrate. 250 μL of aPRP was injected to the distal portion of inner right-side flap (R), while the 250 μL of aPPP (control) was injected in the similar location of the left-side flap (L) prior to the start of R1 and R2 events. At POD 8, the paired flaps were photographed, harvested, and divided into equal proximal (P), medial (M) and distal (D) regions that in turn were subdivided into left, central, and right segments. Right panel. The left segment of P, M or D regions was flash frozen, crushed into powder, lysed, pooled from seven 10-month old retired breeder Lewis strain male rats (mean weight = 542 g), and used for protein separation by lithium dodecyl-sulfate polyacrylamide gel electrophoresis (LDS-PAGE) at 130 V constant in 4–12% gradient NuPAGE gels followed by protein transfer onto 0.22 μm nitrocellulose membranes at 30 V constant for 90 min, and protein expression analysis by immunoblotting (IB) using the primary antibodies against indicated total or phosphorylated (p-) forms of antigens of interest and horseradish peroxidase-conjugated secondary antibodies. Chemiluminescent proteins bands were visualized by a Kodak Image Station 440CF equipped with the Caresteam image analysis software (Kodak, New York, NY) following 5 min strip incubation with 20 ml SuperSignal™ West Dura Extended Duration Substrate (TFS, # 34076)

Article Snippet: We also provide several simulated statistical flap survival data analysis examples in GraphPad Prism 9.5.0 software (Additional File and Additional File , Fig. S12).

Techniques: Control, Injection, Standard Deviation, Two Tailed Test, Clinical Proteomics, Sterility, Concentration Assay, Centrifugation, Pore Size, Polyacrylamide Gel Electrophoresis, Expressing, Western Blot, Software, Stripping Membranes, Incubation

Journal: Biological Procedures Online

Article Title: Standardized Pre-clinical Surgical Animal Model Protocol to Investigate the Cellular and Molecular Mechanisms of Ischemic Flap Healing

doi: 10.1186/s12575-023-00227-w

Figure Lengend Snippet: Application of BEFAF model to explore the effects of pre-conditioning surgical flap delay technique. A representative workflow of flap delay technique using pedicled flaps in 10-month-old male SD rat is shown. A Left flap was raised, placed back onto the resultant wound, and left to fully heal for 7 days. B Delayed flap healing status on 7th POD. C BEFAF surgery was performed on the left and right sides of the animal creating regular non-advanced flaps. During this type of surgery, the microvascular supply at the base of the flap (pedicle) is left intact. D Flaps were allowed to heal under normal conditions for 2 days. E – F On 2nd POD for the right flap and on the 9th POD for the delayed left flap, biopsies were taken from the distal portion of each flap for molecular analysis. G The flaps were advanced and allowed to heal for 7 more days. H Flap healing efficacy was evaluated on 9th POD for the control (C) flap and POD 16th POD for the delayed (D) flap. I Flaps were harvested for additional comparative and correlative analysis with flap reoxygenation that was evaluated by the combined photoacoustic (PA) and Doppler ultrasound (US) imaging ( J ). Ultrasound coupling gel was applied to the animal skin before the images were captured on selected regions (left panel) at the 12 mm focal depth using the Vevo2100 LAZR imaging system (VisualSonics Inc, Toronto, Canada), which operates LZ-250 transducer (21 MHz) frequency transducer and has 20 Hz tunable near-infrared light laser (680–970 nm). Besides B-Mode, which displays a greyscale two dimensional cross-section of tissue, 2-D images were acquired using ‘Oxy-Hemo’ mode, which collects data at 750 and 850 nm wavelengths, and then creates and displays a parametric distribution map of oxygenated Hemoglobin (oxyHb) and total hemoglobin (tHb) at a rate of 1 Hz (right panel).The imaging probe was positioned between the medial and distal segments on 1) the day of flap delay surgery on the R flap to take baseline flap oxygen saturation level measurement designated as R0; 2) on 2nd POD after left-side flap delay on the D flap to take acute reoxygenation response measurement designated as D2; 3) on 2. nd POD after right-side flap raising surgery on the R flap to take acute reoxygenation response measurement (R2) and on the same day on the D flap to assess a secondary reoxygenation response designated as D9

Article Snippet: We also provide several simulated statistical flap survival data analysis examples in GraphPad Prism 9.5.0 software (Additional File and Additional File , Fig. S12).

Techniques: Control, Imaging

Journal: Frontiers in Immunology

Article Title: Impact of the flame retardant 2,2’4,4’-tetrabromodiphenyl ether (PBDE-47) in THP-1 macrophage-like cell function via small extracellular vesicles

doi: 10.3389/fimmu.2022.1069207

Figure Lengend Snippet: Scatterplot of miRNA microarray analysis. CT data from samples (sEVs PBDE+LPS ) and control (sEVs DMSO+LPS ) were analyzed with the GeneGlobe miRCURY LNA miRNA PCR Data Analysis tool ( https://dataanalysis2.qiagen.com/miRCury ). MiRNAs were considered down-regulated if the fold change was <0.5 (green dot) and up-regulated if the fold change was >2 (red dots); in black are reported the unchanged miRNAs with respect to control (sEVs DMSO+LPS ). Normalization for the fold change calculation was performed using UniSp6 exogenous control and the geNorm (Predefined reference miRNA only) function.

Article Snippet: The CT data obtained from control and treated cells were analyzed using the Qiagen GeneGlobe miRCURY LNA miRNA PCR Data Analysis software tool, and the expression values were reported as fold change.

Techniques: Microarray, Control

Journal: Frontiers in Immunology

Article Title: Impact of the flame retardant 2,2’4,4’-tetrabromodiphenyl ether (PBDE-47) in THP-1 macrophage-like cell function via small extracellular vesicles

doi: 10.3389/fimmu.2022.1069207

Figure Lengend Snippet: Scatterplot of miRNA expression in M(0) THP-1 macrophage-like cells treated with sEVs PBDE+LPS . CT values obtained from three independent experiments (M(0) THP-1 macrophage-like treated with sEVs PBDE+LPS vs controls) were analyzed using the GeneGlobe miRCURY LNA miRNA PCR Data Analysis tool. Blue dots show down-regulated miRNAs (fold change <0.5), red is for up-regulated miRNA (fold change >2), and black indicates unchanged miRNAs with respect to control cells.

Article Snippet: The CT data obtained from control and treated cells were analyzed using the Qiagen GeneGlobe miRCURY LNA miRNA PCR Data Analysis software tool, and the expression values were reported as fold change.

Techniques: Expressing, Control